`treeple`.ExtraTreesClassifier#

class treeple.ExtraTreesClassifier(n_estimators=100, *, criterion='gini', max_depth=None, min_samples_split=2, min_samples_leaf=1, min_weight_fraction_leaf=0.0, max_features='sqrt', max_leaf_nodes=None, min_impurity_decrease=0.0, bootstrap=False, oob_score=False, n_jobs=None, random_state=None, verbose=0, warm_start=False, class_weight=None, ccp_alpha=0.0, max_samples=None, max_bins=None, store_leaf_values=False, monotonic_cst=None)[source]#

An extra-trees classifier.

This class implements a meta estimator that fits a number of randomized decision trees (a.k.a. extra-trees) on various sub-samples of the dataset and uses averaging to improve the predictive accuracy and control over-fitting.

Read more in the User Guide.

Parameters:

n_estimatorsint, default=100

The number of trees in the forest.

Changed in version 0.22: The default value of n_estimators changed from 10 to 100 in 0.22.

criterion{“gini”, “entropy”, “log_loss”}, default=”gini”

The function to measure the quality of a split. Supported criteria are “gini” for the Gini impurity and “log_loss” and “entropy” both for the Shannon information gain, see Mathematical formulation. Note: This parameter is tree-specific.

max_depthint, default=None

The maximum depth of the tree. If None, then nodes are expanded until all leaves are pure or until all leaves contain less than min_samples_split samples.

min_samples_splitint or float, default=2

The minimum number of samples required to split an internal node:

If int, then consider min_samples_split as the minimum number.
If float, then min_samples_split is a fraction and ceil(min_samples_split * n_samples) are the minimum number of samples for each split.

Changed in version 0.18: Added float values for fractions.

min_samples_leafint or float, default=1

The minimum number of samples required to be at a leaf node. A split point at any depth will only be considered if it leaves at least min_samples_leaf training samples in each of the left and right branches. This may have the effect of smoothing the model, especially in regression.

If int, then consider min_samples_leaf as the minimum number.
If float, then min_samples_leaf is a fraction and ceil(min_samples_leaf * n_samples) are the minimum number of samples for each node.

Changed in version 0.18: Added float values for fractions.

min_weight_fraction_leaffloat, default=0.0

The minimum weighted fraction of the sum total of weights (of all the input samples) required to be at a leaf node. Samples have equal weight when sample_weight is not provided.

max_features{“sqrt”, “log2”, None}, int or float, default=”sqrt”

The number of features to consider when looking for the best split:

If int, then consider max_features features at each split.
If float, then max_features is a fraction and max(1, int(max_features * n_features_in_)) features are considered at each split.
If “sqrt”, then max_features=sqrt(n_features).
If “log2”, then max_features=log2(n_features).
If None, then max_features=n_features.

Changed in version 1.1: The default of max_features changed from "auto" to "sqrt".

Note: the search for a split does not stop until at least one valid partition of the node samples is found, even if it requires to effectively inspect more than max_features features.

max_leaf_nodesint, default=None

Grow trees with max_leaf_nodes in best-first fashion. Best nodes are defined as relative reduction in impurity. If None then unlimited number of leaf nodes.

min_impurity_decreasefloat, default=0.0

A node will be split if this split induces a decrease of the impurity greater than or equal to this value.

The weighted impurity decrease equation is the following:

N_t / N * (impurity - N_t_R / N_t * right_impurity
                    - N_t_L / N_t * left_impurity)

where N is the total number of samples, N_t is the number of samples at the current node, N_t_L is the number of samples in the left child, and N_t_R is the number of samples in the right child.

N, N_t, N_t_R and N_t_L all refer to the weighted sum, if sample_weight is passed.

New in version 0.19.

bootstrapbool, default=False

Whether bootstrap samples are used when building trees. If False, the whole dataset is used to build each tree.

oob_scorebool or callable(), default=False

Whether to use out-of-bag samples to estimate the generalization score. By default, accuracy_score() is used. Provide a callable with signature metric(y_true, y_pred) to use a custom metric. Only available if bootstrap=True.

n_jobsint, default=None

The number of jobs to run in parallel. fit(), predict(), decision_path() and apply() are all parallelized over the trees. None means 1 unless in a joblib.parallel_backend context. -1 means using all processors. See Glossary for more details.

random_stateint, RandomState instance or None, default=None

Controls 3 sources of randomness:

the bootstrapping of the samples used when building trees (if bootstrap=True)
the sampling of the features to consider when looking for the best split at each node (if max_features < n_features)
the draw of the splits for each of the max_features

See Glossary for details.

verboseint, default=0

Controls the verbosity when fitting and predicting.

warm_startbool, default=False

When set to True, reuse the solution of the previous call to fit and add more estimators to the ensemble, otherwise, just fit a whole new forest. See Glossary and Fitting additional trees for details.

class_weight{“balanced”, “balanced_subsample”}, dict or list of dicts, default=None

Weights associated with classes in the form {class_label: weight}. If not given, all classes are supposed to have weight one. For multi-output problems, a list of dicts can be provided in the same order as the columns of y.

Note that for multioutput (including multilabel) weights should be defined for each class of every column in its own dict. For example, for four-class multilabel classification weights should be [{0: 1, 1: 1}, {0: 1, 1: 5}, {0: 1, 1: 1}, {0: 1, 1: 1}] instead of [{1:1}, {2:5}, {3:1}, {4:1}].

The “balanced” mode uses the values of y to automatically adjust weights inversely proportional to class frequencies in the input data as n_samples / (n_classes * np.bincount(y))

The “balanced_subsample” mode is the same as “balanced” except that weights are computed based on the bootstrap sample for every tree grown.

For multi-output, the weights of each column of y will be multiplied.

Note that these weights will be multiplied with sample_weight (passed through the fit method) if sample_weight is specified.

ccp_alphanon-negative float, default=0.0

Complexity parameter used for Minimal Cost-Complexity Pruning. The subtree with the largest cost complexity that is smaller than ccp_alpha will be chosen. By default, no pruning is performed. See Minimal Cost-Complexity Pruning for details. See Post pruning decision trees with cost complexity pruning for an example of such pruning.

New in version 0.22.

max_samplesint or float, default=None

If bootstrap is True, the number of samples to draw from X to train each base estimator.

If None (default), then draw X.shape[0] samples.
If int, then draw max_samples samples.
If float, then draw max_samples * X.shape[0] samples. Thus, max_samples should be in the interval (0.0, 1.0].

New in version 0.22.

max_binsint, default=255

The maximum number of bins to use for non-missing values.

This is an experimental feature.

store_leaf_valuesbool, default=False

Whether to store the leaf values in the get_leaf_node_samples function.

This is an experimental feature.

monotonic_cstarray_like of int of shape (n_features), default=None

Indicates the monotonicity constraint to enforce on each feature.

1: monotonically increasing
0: no constraint
-1: monotonically decreasing

If monotonic_cst is None, no constraints are applied.

Monotonicity constraints are not supported for:

multiclass classifications (i.e. when n_classes > 2),
multioutput classifications (i.e. when n_outputs_ > 1),
classifications trained on data with missing values.

The constraints hold over the probability of the positive class.

See also

ExtraTreesRegressor: An extra-trees regressor with random splits.
RandomForestClassifier: A random forest classifier with optimal splits.
RandomForestRegressor: Ensemble regressor using trees with optimal splits.

Notes

The default values for the parameters controlling the size of the trees (e.g. max_depth, min_samples_leaf, etc.) lead to fully grown and unpruned trees which can potentially be very large on some data sets. To reduce memory consumption, the complexity and size of the trees should be controlled by setting those parameter values.

References

[1]

P. Geurts, D. Ernst., and L. Wehenkel, “Extremely randomized trees”, Machine Learning, 63(1), 3-42, 2006.

Examples

>>> from sklearn.ensemble import ExtraTreesClassifier
>>> from sklearn.datasets import make_classification
>>> X, y = make_classification(n_features=4, random_state=0)
>>> clf = ExtraTreesClassifier(n_estimators=100, random_state=0)
>>> clf.fit(X, y)
ExtraTreesClassifier(random_state=0)
>>> clf.predict([[0, 0, 0, 0]])
array([1])

apply(X)#

Apply trees in the forest to X, return leaf indices.

Parameters:

X{array_like, sparse matrix} of shape (n_samples, n_features): The input samples. Internally, its dtype will be converted to dtype=np.float32. If a sparse matrix is provided, it will be converted into a sparse csr_matrix.

Returns:

X_leavesndarray of shape (n_samples, n_estimators): For each datapoint x in X and for each tree in the forest, return the index of the leaf x ends up in.

decision_path(X)#

Return the decision path in the forest.

New in version 0.18.

Parameters:

X{array_like, sparse matrix} of shape (n_samples, n_features): The input samples. Internally, its dtype will be converted to dtype=np.float32. If a sparse matrix is provided, it will be converted into a sparse csr_matrix.

Returns:

indicatorsparse matrix of shape (n_samples, n_nodes): Return a node indicator matrix where non zero elements indicates that the samples goes through the nodes. The matrix is of CSR format.
n_nodes_ptrndarray of shape (n_estimators + 1,): The columns from indicator[n_nodes_ptr[i]:n_nodes_ptr[i+1]] gives the indicator value for the i-th estimator.

fit(X, y, sample_weight=None, classes=None)#

Build a forest of trees from the training set (X, y).

Parameters:

X{array_like, sparse matrix} of shape (n_samples, n_features): The training input samples. Internally, its dtype will be converted to dtype=np.float32. If a sparse matrix is provided, it will be converted into a sparse csc_matrix.
yarray_like of shape (n_samples,) or (n_samples, n_outputs): The target values (class labels in classification, real numbers in regression).
sample_weightarray_like of shape (n_samples,), default=None: Sample weights. If None, then samples are equally weighted. Splits that would create child nodes with net zero or negative weight are ignored while searching for a split in each node. In the case of classification, splits are also ignored if they would result in any single class carrying a negative weight in either child node.
classesarray_like of shape (n_classes,), default=None: List of all the classes that can possibly appear in the y vector.

Returns:

selfobject: Fitted estimator.

get_leaf_node_samples(X)#

For each datapoint x in X, get the training samples in the leaf node.

Parameters:

Xarray_like of shape (n_samples, n_features): Dataset to apply the forest to.

Returns:

leaf_node_samplesa list of array_like: Each sample is represented by the indices of the training samples that reached the leaf node. The n_leaf_node_samples may vary between samples, since the number of samples that fall in a leaf node is variable. Each array-like has shape (n_leaf_node_samples, n_outputs).

get_metadata_routing()#

Get metadata routing of this object.

Please check User Guide on how the routing mechanism works.

Returns:

routingMetadataRequest: A MetadataRequest encapsulating routing information.

get_params(deep=True)#

Get parameters for this estimator.

Parameters:

deepbool, default=True: If True, will return the parameters for this estimator and contained subobjects that are estimators.

Returns:

paramsdict: Parameter names mapped to their values.

partial_fit(X, y, sample_weight=None, classes=None)#

Update a decision tree classifier from the training set (X, y).

Parameters:

X{array_like, sparse matrix} of shape (n_samples, n_features): The training input samples. Internally, it will be converted to dtype=np.float32 and if a sparse matrix is provided to a sparse csc_matrix.
yarray_like of shape (n_samples,) or (n_samples, n_outputs): The target values (class labels) as integers or strings.
sample_weightarray_like of shape (n_samples,), default=None: Sample weights. If None, then samples are equally weighted. Splits that would create child nodes with net zero or negative weight are ignored while searching for a split in each node. Splits are also ignored if they would result in any single class carrying a negative weight in either child node.
classesarray_like of shape (n_classes,), default=None: List of all the classes that can possibly appear in the y vector. Must be provided at the first call to partial_fit, can be omitted in subsequent calls.

Returns:

selfobject: Returns the instance itself.

predict(X)#

Predict class for X.

The predicted class of an input sample is a vote by the trees in the forest, weighted by their probability estimates. That is, the predicted class is the one with highest mean probability estimate across the trees.

Parameters:

X{array_like, sparse matrix} of shape (n_samples, n_features): The input samples. Internally, its dtype will be converted to dtype=np.float32. If a sparse matrix is provided, it will be converted into a sparse csr_matrix.

Returns:

yndarray of shape (n_samples,) or (n_samples, n_outputs): The predicted classes.

predict_log_proba(X)#

Predict class log-probabilities for X.

The predicted class log-probabilities of an input sample is computed as the log of the mean predicted class probabilities of the trees in the forest.

Parameters:

X{array_like, sparse matrix} of shape (n_samples, n_features): The input samples. Internally, its dtype will be converted to dtype=np.float32. If a sparse matrix is provided, it will be converted into a sparse csr_matrix.

Returns:

pndarray of shape (n_samples, n_classes), or a list of such arrays: The class probabilities of the input samples. The order of the classes corresponds to that in the attribute classes_.

predict_proba(X)#

Predict class probabilities for X.

The predicted class probabilities of an input sample are computed as the mean predicted class probabilities of the trees in the forest. The class probability of a single tree is the fraction of samples of the same class in a leaf.

Parameters:

X{array_like, sparse matrix} of shape (n_samples, n_features): The input samples. Internally, its dtype will be converted to dtype=np.float32. If a sparse matrix is provided, it will be converted into a sparse csr_matrix.

Returns:

pndarray of shape (n_samples, n_classes), or a list of such arrays: The class probabilities of the input samples. The order of the classes corresponds to that in the attribute classes_.

predict_quantiles(X, quantiles=0.5, method='nearest')#

Predict class or regression value for X at given quantiles.

Parameters:

X{array_like, sparse matrix} of shape (n_samples, n_features): Input data.
quantilesfloat, optional: The quantiles at which to evaluate, by default 0.5 (median).
methodstr, optional: The method to interpolate, by default ‘linear’. Can be any keyword argument accepted by numpy.quantile().

Returns:

yndarray of shape (n_samples, n_quantiles, [n_outputs]): The predicted values. The n_outputs dimension is present only for multi-output regressors.

score(X, y, sample_weight=None)#

Return the mean accuracy on the given test data and labels.

In multi-label classification, this is the subset accuracy which is a harsh metric since you require for each sample that each label set be correctly predicted.

Parameters:

Xarray_like of shape (n_samples, n_features): Test samples.
yarray_like of shape (n_samples,) or (n_samples, n_outputs): True labels for X.
sample_weightarray_like of shape (n_samples,), default=None: Sample weights.

Returns:

scorefloat: Mean accuracy of self.predict(X) w.r.t. y.

set_fit_request(*, classes='$UNCHANGED$', sample_weight='$UNCHANGED$')#

Request metadata passed to the fit method.

Note that this method is only relevant if enable_metadata_routing=True (see sklearn.set_config()). Please see User Guide on how the routing mechanism works.

The options for each parameter are:

True: metadata is requested, and passed to fit if provided. The request is ignored if metadata is not provided.
False: metadata is not requested and the meta-estimator will not pass it to fit.
None: metadata is not requested, and the meta-estimator will raise an error if the user provides it.
str: metadata should be passed to the meta-estimator with this given alias instead of the original name.

The default (sklearn.utils.metadata_routing.UNCHANGED) retains the existing request. This allows you to change the request for some parameters and not others.

New in version 1.3.

Note

This method is only relevant if this estimator is used as a sub-estimator of a meta-estimator, e.g. used inside a Pipeline. Otherwise it has no effect.

Parameters:

classesstr, True, False, or None, default=sklearn.utils.metadata_routing.UNCHANGED: Metadata routing for classes parameter in fit.
sample_weightstr, True, False, or None, default=sklearn.utils.metadata_routing.UNCHANGED: Metadata routing for sample_weight parameter in fit.

Returns:

selfobject: The updated object.

set_params(**params)#

Set the parameters of this estimator.

The method works on simple estimators as well as on nested objects (such as Pipeline). The latter have parameters of the form <component>__<parameter> so that it’s possible to update each component of a nested object.

Parameters:

**paramsdict: Estimator parameters.

Returns:

selfestimator instance: Estimator instance.

set_partial_fit_request(*, classes='$UNCHANGED$', sample_weight='$UNCHANGED$')#

Request metadata passed to the partial_fit method.

Note that this method is only relevant if enable_metadata_routing=True (see sklearn.set_config()). Please see User Guide on how the routing mechanism works.

The options for each parameter are:

True: metadata is requested, and passed to partial_fit if provided. The request is ignored if metadata is not provided.
False: metadata is not requested and the meta-estimator will not pass it to partial_fit.
None: metadata is not requested, and the meta-estimator will raise an error if the user provides it.
str: metadata should be passed to the meta-estimator with this given alias instead of the original name.

The default (sklearn.utils.metadata_routing.UNCHANGED) retains the existing request. This allows you to change the request for some parameters and not others.

New in version 1.3.

Note

This method is only relevant if this estimator is used as a sub-estimator of a meta-estimator, e.g. used inside a Pipeline. Otherwise it has no effect.

Parameters:

classesstr, True, False, or None, default=sklearn.utils.metadata_routing.UNCHANGED: Metadata routing for classes parameter in partial_fit.
sample_weightstr, True, False, or None, default=sklearn.utils.metadata_routing.UNCHANGED: Metadata routing for sample_weight parameter in partial_fit.

Returns:

selfobject: The updated object.

set_score_request(*, sample_weight='$UNCHANGED$')#

Request metadata passed to the score method.

Note that this method is only relevant if enable_metadata_routing=True (see sklearn.set_config()). Please see User Guide on how the routing mechanism works.

The options for each parameter are:

True: metadata is requested, and passed to score if provided. The request is ignored if metadata is not provided.
False: metadata is not requested and the meta-estimator will not pass it to score.
None: metadata is not requested, and the meta-estimator will raise an error if the user provides it.
str: metadata should be passed to the meta-estimator with this given alias instead of the original name.

The default (sklearn.utils.metadata_routing.UNCHANGED) retains the existing request. This allows you to change the request for some parameters and not others.

New in version 1.3.

Note

This method is only relevant if this estimator is used as a sub-estimator of a meta-estimator, e.g. used inside a Pipeline. Otherwise it has no effect.

Parameters:

sample_weightstr, True, False, or None, default=sklearn.utils.metadata_routing.UNCHANGED: Metadata routing for sample_weight parameter in score.

Returns:

selfobject: The updated object.

property estimators_samples_#

The subset of drawn samples for each base estimator.

Returns a dynamically generated list of indices identifying the samples used for fitting each member of the ensemble, i.e., the in-bag samples.

Note: the list is re-created at each call to the property in order to reduce the object memory footprint by not storing the sampling data. Thus fetching the property may be slower than expected.

property feature_importances_#

The impurity-based feature importances.

The higher, the more important the feature. The importance of a feature is computed as the (normalized) total reduction of the criterion brought by that feature. It is also known as the Gini importance.

Warning: impurity-based feature importances can be misleading for high cardinality features (many unique values). See sklearn.inspection.permutation_importance() as an alternative.

Returns:

feature_importances_ndarray of shape (n_features,): The values of this array sum to 1, unless all trees are single node trees consisting of only the root node, in which case it will be an array of zeros.

`apply`(X)	Apply trees in the forest to X, return leaf indices.
`decision_path`(X)	Return the decision path in the forest.
`fit`(X, y[, sample_weight, classes])	Build a forest of trees from the training set (X, y).
`get_leaf_node_samples`(X)	For each datapoint x in X, get the training samples in the leaf node.
`get_metadata_routing`()	Get metadata routing of this object.
`get_params`([deep])	Get parameters for this estimator.
`partial_fit`(X, y[, sample_weight, classes])	Update a decision tree classifier from the training set (X, y).
`predict`(X)	Predict class for X.
`predict_log_proba`(X)	Predict class log-probabilities for X.
`predict_proba`(X)	Predict class probabilities for X.
`predict_quantiles`(X[, quantiles, method])	Predict class or regression value for X at given quantiles.
`score`(X, y[, sample_weight])	Return the mean accuracy on the given test data and labels.
`set_fit_request`(*[, classes, sample_weight])	Request metadata passed to the `fit` method.
`set_params`(**params)	Set the parameters of this estimator.
`set_partial_fit_request`(*[, classes, ...])	Request metadata passed to the `partial_fit` method.
`set_score_request`(*[, sample_weight])	Request metadata passed to the `score` method.

treeple.ExtraTreesClassifier#

`treeple`.ExtraTreesClassifier#